GEPs with rescuing strategy


Program 1. Erythroblasts
Program 2. Lipid antigen activity
Program 3. B cells
Program 4. Immature dendritic cells
Program 5. T cells broad
Program 6. Neuroblastoma patient 21 specific
Program 7. Erythroblasts, late
Program 8. Plasma cells
Program 9. Immune cells
Program 10. Plasma cells patient 14 specific
Program 11. CD34 Pos HSCs
Program 12. Cancer program, ID genes in the top 50
Program 13. Gamma delta T cells
Program 14. Dendritic cells
Program 15. Cytokine-cytokine signaling
Program 16. Erythroid, megakaryocytes
Program 17. Unclear, possible activity program in few cells
Program 18. Plasmacytoid dendritic cells
Program 19. Complement expression activity
Program 20. Hematopoietic granulocyte-monocyte progenitors, curated markers are ranked 1, 2, 3
Program 21. Cancer cells, patients 19, 22 and others
Program 22. Mast cells, curated markers are ranked 4, 5, 6
Program 23. Cell cycle program
Program 24. B cells
Program 25. Monocytes
Program 26. Pro B-cells
Program 27. B cells
Program 28. Cell cycle program
Program 29. Unclear immune, possibly activity program
Program 30. T/NK cells
Program 31. Late erythroid
Program 32. Possibly activity program expressing T and NK cell-like features
Program 33. Monocytes/macrophages
Program 34. LYZ expressing inflammatory macrophages
Program 35. MHC Class II activity program
Program 36. Cancer program, ID expression high
Program 37. Cancer program, BMPR1B ranked 22
Program 38. Monocytes
Program 39. Monocytes/neutrophils
Program 40. NK cells
Program 41. Erythroblasts
Program 42. Interferon genes
Program 43. Cancer program
Program 44. CD8 T cells
Program 45. Pro B-cells
Program 46. Plasma cells
Program 47. Bone marrow platelets
Program 48. Bone marrow plasma cells
Program 49. Unclear, endothelial-like
Program 50. BMP2/4/5-expressiong bone marrow stromal cells
Program 51. Bone marrow plasma cells
Program 52. Non-inflammatory monocyte->macrophages

Dataset Specific GEPs


These GEPs don't appear in the network

Program 10. Neuroblastoma #2
Program 19. Neuroblastoma #5
Program 23. Pro-B Cells
Program 27. Schwannian Stromal Cell: NB

These GEPs appear in the network

Program 1. Endothelial
Program 2. Neuroblastoma #1
Program 3. Translation (Activity Program)
Program 4. Macrophage
Program 5. M2 Macrophage
Program 6. Cancer Associated Fibroblast: Inflammatory
Program 7. Cancer Associated Fibroblast: Myofibroblastic (POSTN+)
Program 8. Cell Cycle (G2-M)
Program 9. Adrenal Cortex Cells
Program 11. Neuroblastoma #3
Program 12. Schwannian Stromal Cell: GNB
Program 13. Erythroblasts
Program 14. Plasmacytoid Dendritic Cell
Program 15. Pre-B Cells
Program 16. Plasma Cells
Program 17. Neuroblastoma #4
Program 18. Endothelial: Lymphatic
Program 19. Neuroblastoma: Adrenergic II (pre-neuronal like)
Program 20. Cytotoxic T Cell
Program 21. Ganglioneuroblastoma Stromal
Program 22. Intermediate Monocyte
Program 24. Neuroblastoma: Adrenergic I (sympathoblast like)
Program 25. Cancer Associated Fibroblast: Intermediate [Myo:Inf]
Program 26. Naive B Cell
Program 28. Cell Cycle (G1/S)
Program 29. Myelocyte
Program 30. Cancer Associated Fibroblast: Intermediate [Inf:AP]
Program 31. Neuroblastoma: Adrenergic III
Program 32. Regulatory T Cell
Program 33. Neuroblastoma: MYCN
Program 34. Cancer Associated Fibroblast: Myofibroblastic (Contractile)
Program 35. Naive T Cell
Program 36. Neuroblastoma #5
Program 37. Neuroblastoma #6
Program 38. M1 Macrophage
Program 39. M-MDSC
Program 40. Cell Cycle (G1)
Program 41. IFN Response (Activity Program)

Dataset Specific GEPs


These GEPs don't appear in the network

Program 12. GMP
Program 15. Megakaryocyte
Program 20. Keratin Expression
Program 23. Megakaryocyte-erythroid progenitors

These GEPs appear in the network

Program 1. Naive B Cell
Program 2. Inflammatory:cytokine signalling I
Program 3. Normal Adrenal Fibroblasts
Program 4. T Cell Activation
Program 5. Neuroblastoma: Adrenergic I (sympathoblast like)
Program 6. Hepatocyte-like Cell
Program 7. Endothelial: Vascular
Program 8. Monocyte/M-MDSC
Program 9. Adrenocortical Cells
Program 10. Erythroblasts
Program 11. Plasma Cells
Program 13. Cell Cycle (G2-M)
Program 14. Mature NKT Cells
Program 16. Mononuclear Phagocyte
Program 17. Undifferentiated lymphocyte
Program 18. Antigen Presentation
Program 19. Cancer Associated Fibroblast: Myofibroblastic (IGF1+)
Program 21. Mast Cells
Program 22. Neuroblastoma: MYCN
Program 24. M2 Macrophage
Program 25. Cancer Associated Fibroblast: Myofibroblastic (POSTN+)
Program 26. Pro-B Cells
Program 27. Endothelial: Lymphatic
Program 28. TNFa signalling via NFkB
Program 29. Endothelial
Program 30. Plasmacytoid Dendritic Cell
Program 31. Myelocyte
Program 32. Regulatory T Cell
Program 33. Monocyte: Inflammatory
Program 34. Natural killer cell (CD16+)
Program 35. Cancer Associated Fibroblast: Myofibroblastic (Contractile)
Program 36. Endothelial: Angiogenesis
Program 37. Naive T Cells
Program 38. CD8+ T Cells
Program 39. Neuroblastoma: Adrenergic II (pre-neuronal like)
Program 40. Fibroblast: Inflammatory
Program 41. Inflammatory: cytokine signalling II

Dataset Specific GEPs


These GEPs don't appear in the network

Program 10. Neutrophil
Program 14. Fetal Kidney II (Podocytes)
Program 20. Hepatocyte-Like Cell II
Program 24. Fetal Kidney III
Program 29. Fetal Kidney IV

These GEPs appear in the network

Program 1. Plasma Cell
Program 2. Neuroblastoma: Adrenergic I
Program 3. Macrophage
Program 4. Fibroblast
Program 5. T Cell: Naive Helper T
Program 6. Fetal Kidney I
Program 7. Cancer Associated Fibroblast: Intermediate [Myo:Inf]
Program 8. Hepatocyte-Like Cell
Program 9. Endothelial I
Program 11. T Cell: Effector T Cell
Program 12. Adrenocortical Cells
Program 13. Monocyte
Program 15. Schwanninan Stromal Cell
Program 16. Macrophage II
Program 17. Erythroblasts
Program 18. T Cells: CD8+
Program 19. Cancer Associated Fibroblast: Myofibroblastic
Program 21. Stress Response
Program 22. Mast Cells
Program 23. M-MDSC
Program 25. Neuroblastoma: Adrenergic II
Program 26. Cell Cycle
Program 27. Plasmacytoid Dendritic Cell
Program 28. Cancer Associated Fibroblast: Inflammatory
Program 30. Natural Killer T Cell
Program 31. Endothelial
Program 32. Naive B Cell
Program 33. Neuroblastoma: Adrenergic III
Program 34. Neuroblastoma: Unknown
Program 35. Neuroblastoma: Adrenergic IV
Program 36. Endothelial
Program 37. Cancer Associated Fibroblast: Myofibroblastic (TAGLN+)
Program 38. Neuroblastoma: Adrenergic V
Program 39. Schwannian Stromal Cell II
Program 40. T Cell: Cytotoxic
Program 41. Inflammatory Macrophage
Program 42. Dendritic Cell
Program 43. T Cell: Regulatory

Dataset Specific GEPs


These GEPs don't appear in the network

Program 2. Neuroblastoma drug-EMT (NB847)
Program 3. Neuroblastoma EMT (NB837:NB847)
Program 12. Neuroblastoma EMT II (NB837)
Program 13. Neuroblastoma drug-EMT II (NB847)
Program 15. Neuroblastoma (NB849)
Program 18. CD4 T Cell
Program 19. Dendritic Cell
Program 23. Monocyte
Program 25. Unclear program
Program 31. Neuroblastoma EMT III (NB837:NB847)
Program 33. Neuroblastoma EMT IV (NB847)
Program 34. Neuroblastoma Broad
Program 36. Neuroblastoma drug-EMT III (NB847)
Program 39. Neuroblastoma drug-EMT IV (NB853)
Program 42. Neuroblastoma (NB831, NB855, NB864)

These GEPs appear in the network

Program 1. Antigen Presentation
Program 4. Cancer Associated Fibroblast: Intermediate [Myo:Inf]
Program 5. Neuroblastoma drug (NB839)
Program 6. Immune unclear
Program 7. Endothelial
Program 8. Macrophage
Program 9. Cancer Associated Fibroblast: Inflammatory
Program 10. Schwannian Stromal Cell
Program 11. Immune unclear II
Program 14. Fetal Liver Hepatoblast-Like
Program 16. NFkB: Myeloid
Program 17. Neuroblastoma: MYCN
Program 20. Natural Killer T Cell
Program 21. Cancer Associated Fibroblast: Myofibroblastic (Contractile)
Program 22. NFkB: Activity Program
Program 24. Cancer Associated Fibroblast: Intermediate [Inf:AP]
Program 26. Neuroblastoma (NB849:NB887)
Program 27. Putative Neuroblastoma
Program 28. M-MDSC
Program 29. IFN Response
Program 30. Neuroblastoma: Adrenergic II
Program 32. NFkB: Fibrotic Neuroblastoma
Program 35. CD8+ T Cells
Program 37. Myofibroblastic Cancer Associated Fibroblast
Program 38. Endothelial
Program 40. Neuroblastoma #11
Program 41. Endothelial: Lymphatic
Program 43. Cell Cycle (G2M)
Program 44. Neuroblastoma: Adrenergic I
Program 45. Plasma Cells